SCAN: a smart application platform for empowering parallelizations of big genomic data analysis in clouds

Xing, Wei, Jie, Wei and Miller, Crispin (2015) SCAN: a smart application platform for empowering parallelizations of big genomic data analysis in clouds. In: 44th International Conference on Parallel Processing (ICPP-2015), 01-04 Sept 2015, Beijing, China.

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Abstract

Cloud computing is often adopted to process big data for genome analysis due to its elasticity and pay-as-you-go features. In this paper, we present SCAN, a smart application platform to facilitate parallelization of big genome analysis in clouds. With a knowledge base and an intelligent application scheduler, the SCAN enables better understanding of bio-applications' characteristics, and helps to orchestrate huge, heterogeneous tasks efficiently and cost-effectively. We conducted a simulation study and found that the SCAN platform is able to improve the performance of genome analysis and reduce its cost in a wide variety of circumstances.

Item Type: Conference or Workshop Item (Paper)
ISSN: 0190-3918
ISBN: 9781467375870
Identifier: 10.1109/ICPP.2015.38
Page Range: pp. 290-299
Additional Information: © 2015 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
Uncontrolled Keywords: genome analysis; application platform; cloud computing; parallelization
Subjects: Computing
Depositing User: WEI JIE
Date Deposited: 07 Mar 2016 12:12
Last Modified: 01 Aug 2017 12:40
URI: http://repository.uwl.ac.uk/id/eprint/1729

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